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Training

Our training focuses on upskilling eLwazi project members and users in how to use the open data science platform and additional computational skills they may need. We work closely with the DS-I Africa consortium training working group which is developing a data science curriculum.

Presenter Title Link to recordings Additional materials
Gerald Mboowa
Cloud-based pathogen genomics with Terra: tools, workflows, and real-world use cases
Related training
  1.   Introduction to Terra
N/A
Denis Yuen
Running cloud-native pipelines with Dockstore and eLwazi Terra
Related training
  1.   Introduction to Dockstore and eLwazi Terra
N/A
Beth Sheets Juan Pablo Ramos Barroso
Introduction to the Workflow Descriptor Language (WDL)
Related training
  1.   Introduction to WDL
  1.   Introduction to WDL slides
  2.   Workflow Description Language (WDL) Documentation
Wei Kheng Teh
The eLwazi Metadata Harmonisation Tool
Related training
  1.   eLwazi Metadata Harmonisation Tool
  1.   eLwazi Reproducible Science Seminar
Phelelani Mpangase
Introduction to Nextflow
Related training
  1.   Introduction to Nextflow
  1.   Nextflow tutorial
Suresh Maslamoney
Introduction to Containers
Related training
  1.   Seminar video
  2.   How to install docker and dockerfile
  1.   Docker Basics Exploring the CLI
  2.   Installation docker-ce
  3.   Introduction to containerization
Dockstore group
Introduction to Dockstore.org: An “app” store for bioinformatics workflows
Related training
  1.   An Introduction to Dockstore for the eLwazi Consortium
N/A
Gen3 group
Introduction to the Gen3 Data Commons system
Related training
  1.   Gen3 DataFramework
N/A
Terra group
Terra tutorial 2022
Related training
  1.   Day 1
  2.   Day 2
  1.   DS-I Africa Pre-Workshop Instructions and Agenda April 2022
  2.   DS-I Africa Terra Overview
  3.   Terra Notebooks Quickstart
  4.   Terra Billing and Access